LINK TO PLANETS
LINK TO TIMELINE
BACK TO IMPERIAL ARCHIVES
(Also, be sure to check out Captain Stern's Index Astartes for more info on Space Marines)

PROGENITOR LEGIONS (now Chapters): FIRST FOUNDING
CHAPTER
ICON
Chapter
Colors
PRIMARCH
Primarch's
    World
Current Base of Operations
Notes
Successor Chapters
Source
1
Dark Angels
Dark Green Lion El' Jonson (missing) Caliban (X) The Rock (asteroid base)

Recruit worlds: Piscina V

13th BC.
Characters: Luther (traitor- led Dark Angels  known as the Fallen). Azrael, 
Ezekiel , Bethor, Sapphon, Asmodai
Angels of Absolution, Angels of Redemption, Angels of Vengeance (unforgiven) IA:v1
All records expunged from the Library- Order origination unknown
3
Emperor's children
Purple Fulgrim 
(daemon Prince)
Chemos (X) (EOT) Slaanesh.
13th Black Crusade.
Characters: Lucius the Eternal,  Fabius Bile (ex- Lt. Cmdr)
Excommunicate Traitoris
IA:v1
4
Iron Warriors
Steel, Brass Perturabo
(daemon Prince)
Olympia (X) Medrengard (EOT) Siege masters. 
Rivals: Imperial Fists.
13th Black Crusade.
Excommunicate Traitoris
IA:v1
5
White Scars
White Jaghatai
Khan (missing)
Mundus Planus Mundus Planus Fast attack. Marauders, Rampagers, Destroyers,  Storm Lords IA:v1
6
Space Wolves
Grey Lemann 
Russ (missing)
Fenris Fenris (the Fang) Geneseed Flaw (Wulfen)
Rivals: Thousand Sons.
Fully committed vs 13th Black Crusade.
Wolf Brothers WD257 p.104
7
Imperial Fists
Yellow Rogal Dorn (killed) Inwit? 
Earth?
Fortress Monastery "Phalanx" Siege masters. 
Rivals: Iron Warriors.
Characters: Sgt. Lysander, Chapter Master Vladimir Pugh, Chaplain Lo Chang, Librarian Franz Grenstein
Black Templars, Crimson Fists WD258 p.76
N: Space Marine
8
Night Lords
Dark Blue Konrad Curze, aka Night Haunter (assassinated) Nostramo (X) Tsagualsa [EF] until Curze assassinated, now in EOT Night fighters, Stealth infiltrators, Terror tactics, Night vision.  13th Black Crusade.
Excommunicate Traitoris
WD259 p.57
9
Blood Angels
Red Sanguinius (killed by Horus) Baal Secundus Baal Prime, Secundus Geneseed Flaw (Red Thirst).  Characters: Dante (LORD), Cleutin (vet sgt), Mephiston (chief librarian), Corbulo (apothecary), Tycho (captain) Angels Encarmine, Angels Sanguine, Angels Vermilion, Blood Drinkers, Flesh Tearers WD260 p.88
10
Iron Hands
Black Ferrus Manus
(missing)
Medusa Medusa (EOT) Bionics used to replace perceived weakness.
Characters: Iron-Father Paullian Blantar,  Dreadnought Blannus
Defended Medusa from 10,000 renegade tanks during13th BC.
Red Talons, Brazen Claw WD261 p.44
WD287 p.69
All records expunged from the Library- Order origination unknown
12
World Eaters
Red 
(white, blue pre-heresy)
Angron (daemon prince) Unknown
(Planet included a Mtn. known as Fedan Mhor- site of slave rebellion led by Angron)
Scattered since Skalathrax Khorne. 
Psycho-Surgery (agression)
13th Black Crusade.
Character: Kharn the Betrayer
Excommunicate Traitoris
WD262 p.36
13
Ultra-
marines
Blue Roboute Guilliman (killed by Fulgrim) Macragge Macragge (Defended from  Hive Fleet Kraken invasion) 
Charadon Crusade
13th BC (1 honor company)
Most stable Geneseed.  Originator of Codex. Characters: Marneus Calgar (MASTER), Tigurius (Chief Librarian), Cassius (Chaplain), Helveticus (Standard), Invictus (Capt, 1st Co.) Aurora, Black Consuls, Eagle Warriors, Genesis Chapter, Inceptors, Libators, Nemesis, Novamarines, Patriarchs of Ulixis, Praetors of Orpheus, Silver Eagles, White Consuls. (total 23 2nd founding) WD263 p.18
14
Death Guard
Green / brown
(off-white pre-
heresy)
Mortarion (daemon prince) Barbarus (X) Plague Planet (EOT) Nurgle.
13th Black Crusade (Subiaco Diablo).
Character: Typhus
Excommunicate Traitoris
WD264
15
Thousand Sons
Blue, Yellow
(red pre- heresy)
Magnus the Red (daemon prince) Prospero (X) Planet of the Sorcerors (EOT) Tzeentch. 
Most mutated gene seed of all primarchs.
Rivals: Space Wolves.
13th Black Crusade.
Character: Ahriman.
Excommunicate Traitoris
WD266 p.62
16
(Luna Wolves)
(Sons of Horus)
Black Legion
(light grey)
(pale green)
Black
Horus (killed by Emperor) Cthonia (X) EOT Character:  Abaddon (current Commander).  Leader of many black crusades including the most recent (13th BC).
Excommunicate Traitoris
WD267 p.31
17
Word Bearers
Crimson Lorgar (daemon Prince) Colchis 
(X  by Ultra- marines)
EOT, Maelstrom Chaos undivided.  13th Black Crusade.
Excommunicate Traitoris
WD269 p.111
18
Sala-
manders
Green, Black pads Vulkan (missing) Nocturne Prometheus (moon of Nocturne) Smallest 1st founding legion.  Loyal in Badab War. Characters: Tu'shan (chapter master), Xavier (Chaplain)
None Known (possibly Storm Giants, Black Dragons)
WD273 p.114
19
Raven Guard
Black Corax (missing, left for Eye of Terror) Deliverance
(renamed- originally Lycaeus. Moon of Kiavahr forge world)
Deliverance (Ravenspire tower) Guerilla Warfare.
Geneseed Flaw (no Mucranoid, Betcher's, mutated Melanchrome)
Black Guard, Revilers, Raptors WD275 P.96
20
Alpha Legion
Blue, Green Alpharius (Killed by Guilliman) No Record EOT Infiltration, use of cultists.  13th Black Crusade.
Excommunicate Traitoris
2C:Chaos
3C:CSM2 p.40

THESE CHAPTERS ARE KNOWN BY NAME ONLY(In italics = from 40K novels):
Absolvers, Adulators, Angels of Damnation, Angels of Penance, Angels of Purgatory, Angels of Repentance, Angels of Retribution, Angels Penitent, Angels Redeemed, Angels Repentant, Angels Resplendant, Angels Revenant, Avengers, Benedictors, Black Inculpators, Contenders, Crimson Shades, Crusaders, Dark Brotherhood, Desert Lions, Dictators, Espandors, Excubants, Execrators, Exemplars, Hounds of Demos, Inculcators, Invictors, Inviolators, Liberators, Lords of Wrath, Oblators, Panthers, Penitents,  Purple Stars, Purgators, RavagersReclaimers, Redeemed, Redeemers, Reparators, Retractors,  Rhetors, Star Leopards, Stone Hearts, Supplicators, Tempestors, Terror Tigers, Tormented, Tormentors, Tributors, Valedictors, Venerators, Venerators of Osiron, Victors, Vindicators, Warriors Tempest.  (54)

These names are assumed to be variants, misspellings or otherwise duplicates of listed names, the listed name mentioned in (parentheses):  Emperor's Scythes (Scythes of the Emperor), Lamentors (Lamenters), Malevolant (Marines Malevolant), Mantis Warriors (Mantis Legion),  Marines Errantor (Marines Errant), Mentor Legion (Mentors), Tiger Claws (Astral Claws),  Warriors Adept (Warrior Adepts).

SOURCES OF INFORMATION.  Where multiple sources exist but are not listed, the source(s) listed is the most current / most detailed.  Entries listed in italics are from novels, or are little more than "example" color schemes  (no real background available).  All other sources are official GW publications including White Dwarf magazine.
Abbreviations explained: WD = White Dwarf, issue # and page #.    RT= 1st Edtition 40K Rogue Trader book.   1Comp.= First Edition 40K compendium (red book).  CA2 = Chapter Approved vol. 2 (2001).  CA3 = Chapter Approved vol. 3 (2003).     2C:U = 2nd Edition Codex: Ultramarines.    2C:AOD = 2nd edition Codex Angels of Death.  2C:Chaos = 2nd Edition Codex: Chaos.    3C:Arm = Codex Armageddon      IAv1= Index Astartes: volume 1 (3rd edition publication).  3C:CSM2= 3rd edition Codex: Chaos Space Marines (2nd edition released 2002). 3C:DH = 3rd Edition Codex: Daemonhunters.  Insig= Insignium Astartes (oversize fluff book). N= Novel (name, page # if applicable)

A-H
CHAPTER ICON Chapter Colors Notes Base of Operations Founding Descended from: Source
Angels Encarmine Red Highly active chapter- rarely at full strength . Second (M31) Blood Angels 2C:AOD
3C:BA
Angels of Absolution
White Unforgiven.  Charadon Crusade.  13th BC. . Second (M31) Dark Angels 2C:AOD
3C:DA2
Angels of Fire
Crimson . . (M36) .
WD248 p.76
Angels of Redemption
Dark Green / White Halved Unforgiven . Second (M31) Dark Angels 2C:AOD
3C:DA2
WD248 p.76
Angels of Vengeance
Black Unforgiven . Second (M31) Dark Angels 2C:AOD
3C:DA2
Angels of Vigilance
Tan 13th BC. . (M40) .
WD248 p.76
Angels Porphyr
Blue / White Halved Brother Damos- Dreadnought . (M31) .
WD248 p.76
Angels Sanguine
Red / Black Halved terrible secret.
13th BC.
. Second (M31) Blood Angels 2C:AOD
3C:BA
Angels Vermilion
Crimson History since second founding largely unknown . Second (M31) Blood Angels 2C:AOD
3C:BA
Astral Claws
. Led Badab war revolt.  Became Red Corsairs (Excom- municate).  Lufgt Huron, CMDR. (Huron Blackheart). Badab (forfieted) now Maelstrom . . 1Comp. P.34
Aurora Chapter
Green . . Second (M31) Ultramarines  2C:U
Avenging Sons Blue Codex Chapter . . . Insig
Black Consuls
Black Codex Chapter . Second (M31) Ultramarines  2C:U
Black Dragons
Black Mutated Ossmodula causes bony crests on head and blades on arms.  Formed into Dragon Claws units. Fleet? 21st (Cursed)  (M36) Salamanders? WD248 p.76
IA:v1 p.7
Black Guard . . . . Second (M31) Raven Guard 3C:SM
Black Talons
. . . . 2C:U
Black Templars
Black, White pads High Marshal Helbrecht, Marshal Actoan Fleet Second (M31) Imperial Fists WD248 p.76
Black Wings Black/ Dark Red Halved Codex Chapter . . . Insig
Blood Drinkers Red Codex Chapter .  unknown?  Second (M31)? Blood Angels 2C:AOD
3C:BA
Blood Ravens
Red, White pads Obsessed with aquisition of knowledge.    Azariah Vidya, Father Librarian.  Force Commander Angelos.  Librarians may lead companies. Battle Barge: Onis Arcanum.
R= Cyrene and other Psyker rich worlds.
unknown unknown WD295 p.116
Brazen Claw
Red/ Blue Quartered 13th BC. . Second (M31) Iron Hands 2C:U
Brotherhood of a Thousand Blue-Grey Codex Chapter . . . Insig
Celebrants
Yellow blended up into red . . (M36-M41) . WD248 p.76
Celestial Lions
Gold, Blue pads . . (M38) . WD248 p.76
Children of Purgatos . Green, flames Renegade Purgatos? . . 3C:CSM2 p.76
Crimson Fists
Dark Blue, Crimson Nearly destroyed by own defense missile (Waaagh! Snagrod). 
Alexis Polux (1st Master).  Master Pedro Kantor. Captain Cortez, Captain Drakken.
Rynn's World 
Recruit World: Blackwater
(Loki Sector,
Segm. Temp)
(previously crusading fortress-Monastery Rutilus Tyrannus).
Second (M31) Imperial Fists WD287 p.86
Dark Eagles Olive Green Codex Chapter . . . Insig
Dark Crusaders
Black . . . . 3C:SM p.20
Dark Hands Grey Codex Chapter . . . Insig
Death Eagles
Purple/ white Quartered . . . Ultramarines? .
Death Knights Green Codex Chapter . . . Insig
Death Spectres . Albino warriors.  13th BC- Siege of Gorgosa (planet Lethilar). . . . IA:v1 p.5
WD283 p. 69
Death Strike Blue Codex Chapter 

(May be updated Rainbow Warriors)

. . . Insig
Deathwatch
Black with Silver left arm, original chapter pad on right Ordo Xenos equivelant of Grey Knights.  First line of defense against ancient alien threats (from the Halo stars mostly). On station in Halo zone and elsewhere . Marines recruited from regular chapters, such as the Mortifactors, Ultramarines, Scythes of the Emperor, and Lamenters. WD259 p.46 or, 
CA2 p.57
Destroyers . . . . Second (M31) White Scars 3C:SM
Doom Eagles
Silver, Red trim Codex Chapter. 
13th BC- Belis Corona subsector, vs. plague of unbelief (Captain Luctus, 3rd Co.)
. Second (M31) . 2C:U
Doom Warriors Yellow Codex Chapter . . . Insig
Eagle Warriors
Blue/ White Halved Codex Chapter . Second (M31) Ultramarines 3C:SM
Emperor's Hawks Dark Red Codex Chapter . . . Insig
Emperor's Warbringers Grey Codex Chapter . . . Insig
Excoriators . . 13th BC. . Astartes Praeses . WD 281 p.74
Executioners
Black / grey camo Badab War (renegade).  On 100 year penitent crusade.  Homeworld Forfeited to Loyalist chapter. . . 1Comp. P.34
Exorcists
Red Badab War (loyal).
13th BC.
Fleet (M40) . 3C:Arm
Extinction Angels Purple Renegade Invasion of Demios Primary (13th BC) . . 3C:CSM2 p.76
WD287 p.64
Fire Angels
White, Red Badab War (loyal). . . . 1Comp. P.34
Fire Hawks
Yellow, Red flames Lost in Warp 963.M41 
(WD278 lists date as 983)
Became Legion of Damned
Homeworld=Zhoros (X=thermal bombed.)

Mobile Space Fortress "Rapturous Rex" (Lost in Warp)

21st (Cursed) (M36) Ultramarines? WD99 P.39
Flame Falcons . . Excommunicated within a century of their inception. Mutation: spontaneous combustion. Lethe (southern rim)- cleansed by Grey Knights 21st (Cursed) (M36) . IA:v1 p.13, 
WD278 p.57
Flesh Tearers
Crimson, Black pads Black rage 
Only 4 companies
Planet- Cretacia 
(Barge- Victus)
Second (M31)  Blood Angels IA:v1
Genesis Chapter
Red Codex Chapter . Second (M31) Ultramarines 2C:U
3C:SM
Grey Knights
Steel with dark red trim Assigned to Ordo Malleus. 

Bio- engineering, Psycho- surgery used to increase resistance to daemons.

Titan
(site of the Librarium Demonica)
Secret- around time of Second (M31)  Adeptus Mechanicus used all new gene seed supposedly from the emperor . Codex: Daemonhunters
Grey Slayers . Grey? Mutants purged from chapter . unknown . Slaves to Darkness P.5
Grief Bringers . Green with purple Chevorns Cmdr. Hachard Vs. Enslavers (Valhall II) . . N: Deathwing (Warped Stars)
Harbingers . . Defense of Piscina IV w/ Dark Angels.  Orks purged from Piscinan belt.  Chapter Master Nimrod Grudge.  Planet and ship assault experts.  13th BC- vs. Death Guard, plague of unbelief. Black Planet. 
Use Battle Barges (Unrelenting Fury)
. . 3C:SM p.44
N:Angels of Darkness p.80
WD281 P.74
WD283 p.71
Hawk Lords Purple Codex Chapter . . . Insig
Heralds of Ultramar Blue Codex Chapter . . Ultramarines? Insig
Howling Griffons
Red/ Yellow Quartered Badab War (loyal). 
13th BC.  Chapter master Alvaro- nemesis= Daemon prince Periclitor of the Night Lords.
. . . 1Comp. P.34
3C:SM
WD 283 p.68
(55)

I-Z
CHAPTER ICON Chapter Colors Notes Base of Operations Founding Descended from: Source
Imperial Castellans Offwhite, Blue Codex Chapter . . . Insig
Imperial Paladins Blue Codex Chapter . . . Insig
Imperial Harbingers Dark Grey Codex Chapter . . . Insig
Imperial Stars Purple Codex Chapter . . . Insig
Imperial Talons Orange Codex Chapter . . . Insig
Inceptors . . . . Second (M31) Ultramarines 3C:SM p.47
Invaders Green Codex Chapter . . . Insig
Iron Champions
Black, Steel pads . . unrecorded .
WD248 p.76
Iron Fists . . Verchen(Chapter Master) . . . .
Iron Hearts . . Rubinek (Primarch??) Battle simulator invaded by daemons . . N: Into the Maelstrom p. 199
Iron Knights . Black, Grey? Self imposed penitent crusade. 13th BC. . . . WD 281 p. 74
WD311 p.85
Iron Lords Black, Dark Red legs Codex Chapter . . . Insig
Iron Snakes Blue-Grey Codex Chapter.  13th BC. . . . Insig
Knights of Gryphonne Orange Codex Chapter . . . Insig
Lamenters
Yellow Ill-Fated.  Badab War (rebel). On 100 year penitent crusade.  Charadon Crusade.  Hive Fleet Kraken (hvy losses) . 21st (Cursed) (M36) Blood Angels? (Sanguineous) 1Comp. P.34, WD278 p.57
Legion of the Damned
Black Undead. Appear from nowhere. Warp Fire Hawks lost in warp in 40,963  Was Fire Hawks
WD99 P.39
Libators . . . . Second (M31) Ultramarines 3C:SM
Mantis Legion
Green Badab War (rebel). On 100 year penitent crusade Homeworld Forfeited to loyal chapter . . 1Comp. P.34
Marauders
Yellow . . Second (M31) White Scars 3C:SM  p.22, 47
Marines Errant
White/blue Halved Charadon Crusade . . . 1Comp. P.34
Marines Exemplar . Defending vs. 13th BC.
Chapter Master Cmdr. Maxim Absolon killed - Capt. Raoul in charge now.
. Astartes Praeses . WD 281 p.74
WD 283 p.70
WD311 p.85
Marines Malevolent
Yellow . . (M32) .
WD248 p.76
Masters of Protelus White, Blue Codex Chapter . . . Insig
Mentors
White, Green Trim Cmdr. Nisk Ranthall
Chapter acts as test bed for new Imperial Hardware.  Squads loaned to other SM, IG
Location of Monastery- Retreat kept Secret. 26TH 
(dark period). 
Chapter 888
. WD98 P.44
1Comp. P.4
Metamarines White, Blue Codex Chapter . . . Insig
Minotaurs
Yellow/red striped Berserkers.  Badab War (loyal).  Fleet action vs. Lamenters. . 21st (Cursed) (M36) . 1Comp. P.34, WD278 p.57
Mortifactors
Off-white, Black, Yellow trim Veneration of the dead. Recruits are cannibals...
Aurellian- a recruit  taken from Mortifactors by Grey Knights
Sasebo Tezuka- 1st Master.
Posul 
(Feral world. 
Night World.  Basilica Mortis- Sepulcheral Fortress in orbit over planet)
(M40) .
WD248 p.76, WD277 p. 93
N- Warriors of Ultramar
Nemesis . . . . Second (M31) Ultramarines .
Night Watch . . Defending vs. 13th BC. . (Astartes Praeses) WD 281 p.74
Novamarines
White/ Blue quartered Badab War (loyal).
13th BC.
. Second (M31) Ultramarines 1Comp. P.34
3C:SM  p.47
Omega Marines
Black / White halved . . (M40) .
WD248 p.76
Patriarchs of Ulixis . . . . Second (M31) Ultramarines 3C:SM  p.47
Praetors of Orpheus . . Orpheus (world) Second (M31) Ultramarines 3C:SM p.47
The Pyre . Orange Renegade . . . 3C:CSM2 p.76
Rainbow Warriors
Blue . . . . RT
Rampagers
Red Facial Scars . Second (M31) White Scars 3C:SM  p.22, 47
Raptors
Olive Green . . (M31) Raven Guard
WD248 p.76
Red Hunters Red Codex Chapter . . . Insig
Red Scorpions
Red Badab War (loyal) Carab Culln (CMDR) . . . 1Comp. P.34
Red Talons Red . . Second (M31) Iron Hands 3C:SM  p.22, 47
Red Templars Red Codex Chapter . . . Insig
Red Wolves Dark Red Codex Chapter . . . Insig
Relictors
Steel, black pads Rumored to use the power of chaos against itself, including wielding daemon weapons.  Defending vs. 13th BC (Xersia) . (M36) 
Astartes Praeses
.
WD248 p.76
WD281 p.74
Revilers
Grey . . Second (M31) Raven Guard 3C:SM  p.22, 47
Scythes of Emperor
Black, Yellow Hive Fleet Kraken (hvy losses)
Chapter Master Thorcyra.
Sotha (destroyed by Tyranids). 
May have relocated to Miral Prime.
. . .
Silver Eagles . . May actually be Doom Eagles (typo?) . Second (M31) Ultramarines .
Silver Skulls
Steel, black pads Charadon Crusade Recruit from Garanda II exact date unknown (M31) Ultramarines WD248 p.76
Skull Bearers Brown Codex Chapter . . . Insig
Sons of Antaeus . Grey and Black Augmented Skeletons.  Third Inter-Guild War of the Inca Sector, 850-901.M41 Ultima Segmentum? 21st (Cursed) (M36) ?  (as resilient as the Death Guard...) WD278 p.58
Sons of Guilliman
Blue / White Quartered . . (M33) Ultramarines?
WD248 p.76
Sons of Malice . White Renegade.  13th BC. Scelus (near EOT, Perditia) . . 3C:CSM2 p.76
WD 281 p. 72
Sons of Medusa
Green Badab War (loyal) Medusa? . Iron Hands?? 1Comp. P.34
3C:SM
Soul Drinkers (chalice) Purple, Bone Renegade Fleet?  Glory (X)
Brokenback (Space Hulk)
. Imperial Fists N: Soul Drinker
Space Sharks
Grey Badab War (loyal) . . . 1Comp. P.34
Star Dragons Blue Codex Chapter . . . Insig
Star Phantoms . . Badab War (loyal) . . . .
Star Scorpions . As Mentors? Devastated by Warp Entities when fleet trapped in warp.
Redundant Gene Seed leads to demise.
. 25th 
Original bearer of Chapter # 888
. WD 98
Steel Cobras . Dark Brass Renegade . . . 3C:CSM2 p.76
Storm Callers Red Codex Chapter . . . Insig
Storm Giants
Off-White . . (M41) Salamanders?  White Scars? 3C:Arm
WD248 p.76
Storm Lords
White / Red Halved . . Second (M31) White Scars 3C:SM p.47
WD248 p.76
Storm Warriors Violet Codex Chapter.  13th BC. . . . Insig
Subjugators . . Assisted by Sons of Antaeuos Vs. Eldar Pirates (Void Dragons).  Cpt. Rakman.
Newly formed chapter.  13th BC- Detonating Ramilies class star fort to prevent capture.
Space Borne (Astartes Praeses) . WD278 p.58
WD281 p.74
Thunder Barons . . Renegade . . . N: Soul Drinker
Violators . Blue Renegade.  13th BC. . . . 3C:CSM2 p.76
WD281 P.72
War Bearers Olive Green Codex Chapter . . . Insig
Warmongers Green / Blue Quartered Codex Chapter . . . Insig
Warrior Adepts Blue/ Dark Red Quartered . . . . Insig
Warp Ghosts . Faded Grey Renegade. 13th BC (Agripinaa system). . . . 3C:CSM2 p.76
WD281 p.72
White Consuls
White 13th BC. . Second (M31) 
Astartes Praeses
Ultramarines 3C:SM  p.22, 47
White Panthers
Black, White . . recent . 2C:U
Wolf Brothers . . Disbanded due to genetic instability . Second (M31) Space Wolves 2C:SW
(68)
765.M41:  Chapter Losses to date:  13 Lost in warp, 21 Irrecoverable battle losses, 9 Gene seed failure, 4 Inquisitorial purge, 16 Other circumstances. (For the record,  195 chapters listed above)

THE FOUNDINGS
There have reportedly been 26 foundings so far.
M31- FIRST- PROGENITOR.   (?)-    Legions made up from gene seed samples of the primarchs, even while primarchs scattered and undiscovered.
M31- SECOND- PRIMOGENITOR.  (30,021)- Legions split up into chapters.  It is unclear whether new chapters were built up from gene seed as well.
M33
????- THIRTEENTH- DARK FOUNDING.  Unknown number or fate of chapters.
M36? TWENTY-FIRST.  Known as the Cursed Founding.  Occurs shortly before the age of apostasy (which was in early M36).
M38
M40
??? TWENTY-FIFTH.
M41- (40, 736)- TWENTY-SIXTH.
Astartes Praeses- a group of 20 chapters formed with the express purpose of of guarding the Eye of Terror.
 

PRIMARCHS THAT SURVIVED THE HORUS HERESY
    According to 2nd edition background,  9 of the Primarchs "survived" the Horus Heresy- the rest died or fled into the Eye of Terror.   We know that Sanguinius and Horus died.   We also know (as of WD 261) that Ferrus Manus is presumed dead at Isstvan V (though his body may have been recovered and taken to Mars). We know that Guilliman, Jonson, Khan, Russ, Dorn, Vulkan, and Corax survived (especially since they are mentioned in the most recent Black Templars background).    That  makes 7 loyal primarchs.  The other two could be those from the deleted records (the 2nd and 11th legions).    The more likely possibility is that Konrad Curze and Alpharius count as survivors, as they did not become Daemon Princes nor were they killed until AFTER the heresy.
    Note also that the 2nd edition background indicates that of those 9 primarchs, all of them had died (or disappeared?) after 1400 years (of being  created, presumably).  Their remains have since become relics, particularly the tomb of Roboute Guilliman.  Rumours exist of the possibility that Lemann Russ, Ferrus Manus, Corax, and Lion El' Jonson will return some day, of course...
   Six of the Traitor Primarchs have gone on to become Daemon Princes (Fulgrim, Angron, Mortarion, Magnus the Red, Perturabo, Lorgar).  Konrad Curze is confirmed dead (by an Assassin) according to background in the 2nd Edition Chaos codex and the 3rd edition Assassin codex, though he was killed after the heresy, not during.  The IA article on the Alpha Legion settles the fate of Alpharius- killed in single combat by Roboute Guilliman after the Horus Heresy.  Guilliman was in turn killed by the daemon prince Fulgrim, long after the heresy was over.
 
Killed during Horus Heresy Loyalists that Survived Heresy Killed after  Heresy Daemon Princes Missing
Sanguinius, Horus, (Ferrus Manus) Guilliman, Jonson, Khan, Russ, Dorn, Vulkan, and Corax Curze, Alpharius, Guilliman Fulgrim, Angron, Mortarion, Magnus the Red, Perturabo, Lorgar Jonson, Khan, Russ, Manus, Vulkan, Corax

THE ISSTVAN V DROP SITE MASSACRES
According to various backgrounds (which all agree on this point), Horus had Five Legions that had sided with him (and against the Emperor) before the Isstvan V event.  Seven legions were sent against him at Isstvan V- Four of which changed sides and joined Horus (referred to most recently in the second printing of the 3rd Edition Codex Chaos Space Marines, and the Index Astartes: Raven Guard- WD 275 p.101), the other Three of which were destroyed (more on that later).
 
5 WITH HORUS 
BEFORE ISSTVAN V
4 JOINED HORUS 
AT ISSTVAN V
3 FORCES DESTROYED 
AT ISSTVAN V
6 NON- PARTICIPANTS 2 DELETED 
(role unknown)
Sons of Horus (Horus' own Legion)
Night Lords
Word Bearers
Alpha Legion
Thousand Sons (attacked by Space Wolves prior to conflict)
Iron Warriors
Emperor's Children (corrupted by Horus just before conflict)
World Eaters (Recruited instead of subdued by Horus)
Death Guard
Iron Hands
Salamanders
Raven Guard
Ultramarines, White Scars, Imperial Fists, Blood AngelsDark Angels, Space Wolves Legion #2
Legion #11

TURNING OF THE LEGIONS
According to IA: Word Bearers (WD 269 p.113), the Word Bearers were the first legion to be corrupted by Chaos.    The Night Lords are stated to have gone renegade before the Horus Heresy even broke out.  The Word Bearers were already followers of Chaos before officially joining Horus, and had also sent a massive force against the Ultramarines homeworlds around this time.  The Emperor's Children were reportedly corrupted by Horus when they were sent to bargain for peace right before the conflict.   The Iron Warriors themselves are specifically said to turn at Isstvan V. The only conflict with the information above is the turning of the World Eaters, whom Horus was sent to subdue before Isstvan V, and he recruits them instead.  It seems unlikely that anyone would send the World Eaters to subdue Horus after they had previously sent Horus to subdue the World Eaters.

ISSTVAN III and THE EISENSTEIN
With the advent of Decipher's Horus Heresy CCG (and corresponding art book), some of the classic background surrounding Horus and the legions has been brought back into light (though it appears to conflict with the background from the Index Astartes articles on some points).  In summary, Horus was wounded on Davin and tended to by the warrior lodges there, who converted Horus to the worship of Chaos.  Horus then had marines from the Emperor's children, World Eaters, and Death Guard inducted into these warrior lodges.  When Horus and these three legions were sent to subdue a tyrant on Isstvan III, Horus and the other corrupted primarchs agreed to eliminate the marines in their legions known to still be loyal to the Emperor.  The loyalists were sent to subdue the planet, and after they succeeded, the traitor ships virus bombed Isstvan III.  It did not kill all the loyalist marines though, and a handful of Emperor's Children, World Eaters, and Death Guard loyalists were still on board the orbiting ships.  Led by Captain Garro of the Death Guard, these loyalists escaped on the frigate Eisenstein to  warn the Emperor of this betrayal.  Some of the loyal Emperor's Children marines (led by captain Tarvitz I believe)  made their way to the planet surface in a Thunderhawk, to tell their suriviving brethren of the betrayal.  A bloody fight ensued over the wasted ruins of Isstvan III when the traitors dropped to the planet to wipe out their loyalist brothers.  The Isstvan III massacres were the first (and possibly last) time marines of the same Legion fought on both sides of a conflict.

3 LEGIONS WIPED OUT?
The Index Astartes articles name these legions, nullifying my original assumption that two of the three Legions destroyed at Isstvan V are the ones Deleted from Records (Number 2 and 11).  In the Iron Hands IA article (WD 261), it is clearly stated that Ferrus Manus and his veterans spearheaded the attack on Horus' forces along with 2 other Legions (and later refers to the Salamanders and Raven Guard legions).   This information is confirmed in the Raven Guard IA (WD 275, p.99).
    Since only a small force of  Iron Hands could get to Isstvan V in time, the rest of the Legion survived the massacre, carrying on to this day and yielding successor chapters even though Ferrus Manus was killed in the conflict.   The Salamanders continue on (though they have no known successor chapters!)-  Vulkan survived the heresy according to the background in Codex: Armageddon (under the Black Templars of all places), so it was possible for the Salamanders to be built back up from almost nothing if need be.  The Raven Guard Legion was shattered, but Corax survived, and resorted to accelerated Zygote development only to create monsters which were never spoken of.  The Raven Guard operated in small squads behind enemy lines until they could finally build up their forces again, nearly a century after the end of the Horus Heresy.  They also welcomed the Index Astartes principle of breaking up the legions, forming 3 successor chapters.